As presented at Princeton University on 2018-02-06HEADv1.0master

7 files changed, 180 insertions, 0 deletions

diff --git a/figs/atoms.fig/Makefile b/figs/atoms.fig/Makefile
new file mode 100644
index 0000000..b0cdfa6
--- /dev/null
+++ b/figs/atoms.fig/Makefile
@@ -0,0 +1,15 @@
+PROJECTNAME=crystal liquid gas
+PNGS=$(addsuffix .png, $(PROJECTNAME))
+
+all: $(PNGS)
+
+$(PNGS):
+	cp $(patsubst %.png, %, $@)-base.gp $(patsubst %.png, %, $@).gp
+	python $(patsubst %.png, %, $@).py >> $(patsubst %.png, %, $@).gp
+	gnuplot $(patsubst %.png, %, $@).gp > $@
+
+clean-aux:
+	rm -f $(addsuffix .gp, $(PROJECTNAME))
+
+clean: clean-aux
+	rm -f $(PNGS)
diff --git a/figs/atoms.fig/crystal-base.gp b/figs/atoms.fig/crystal-base.gp
new file mode 100644
index 0000000..4502919
--- /dev/null
+++ b/figs/atoms.fig/crystal-base.gp
@@ -0,0 +1,21 @@
+set terminal pngcairo size 2048,2048
+
+set key off
+unset colorbox
+unset border
+unset xtics
+unset ytics
+unset ztics
+
+set parametric
+
+set view equal xyz
+
+set isosample 100
+
+set pm3d depthorder
+set pm3d lighting primary 0.50 specular 0.6
+
+set palette defined (0 "#339999", 1"#339999")
+
+splot \
diff --git a/figs/atoms.fig/crystal.py b/figs/atoms.fig/crystal.py
new file mode 100644
index 0000000..4b1ba3c
--- /dev/null
+++ b/figs/atoms.fig/crystal.py
@@ -0,0 +1,24 @@
+#!/usr/bin/env python3
+
+from math import *
+import random
+import sys
+
+# size of lattice
+N=5
+
+# configuration
+config=[]
+for i in range(N):
+    for j in range(N):
+        for k in range(N):
+            config.append([2*i+((j+k)%2),sqrt(3)*(j+(k%2)/3),2*sqrt(6)/3*k])
+
+
+for i in range(len(config)):
+    print(str(config[i][0])+"+cos(u)*sin(v)", end=",")
+    print(str(config[i][1])+"+sin(u)*sin(v)", end=",")
+    print(str(config[i][2])+"+cos(v)", end=" ")
+    print("with pm3d", end="")
+    if i<len(config)-1:
+        print(", \\")
diff --git a/figs/atoms.fig/gas-base.gp b/figs/atoms.fig/gas-base.gp
new file mode 100644
index 0000000..7e337b6
--- /dev/null
+++ b/figs/atoms.fig/gas-base.gp
@@ -0,0 +1,21 @@
+set terminal pngcairo size 2048,2048
+
+set key off
+unset colorbox
+unset border
+unset xtics
+unset ytics
+unset ztics
+
+set parametric
+
+set view equal xyz
+
+set isosample 100
+
+set pm3d depthorder
+set pm3d lighting primary 0.5 specular 0.6
+
+set palette defined (0 "#339999", 1"#339999")
+
+splot \
diff --git a/figs/atoms.fig/gas.py b/figs/atoms.fig/gas.py
new file mode 100644
index 0000000..8685999
--- /dev/null
+++ b/figs/atoms.fig/gas.py
@@ -0,0 +1,39 @@
+#!/usr/bin/env python3
+
+from math import *
+import random
+
+# size of space
+L=15
+# number of particles
+N=10
+
+# check whether two rods overlap
+def check_overlap(sphere1,sphere2):
+    if(sqrt((sphere2[0]-sphere1[0])**2+(sphere2[1]-sphere1[1])**2+(sphere2[2]-sphere1[2])**2)<2):
+        return(True)
+    return(False)
+
+# configuration
+config=[]
+# add spheres
+while len(config)<N:
+    # random position
+    x=[random.uniform(0,L), random.uniform(0,L), random.uniform(0,L)]
+    # check it does not interfere with other spheres
+    fine=True
+    for sphere in config:
+        if(check_overlap(sphere,x)):
+            fine=False
+            break
+    if fine:
+        config.append(x)
+
+for i in range(len(config)):
+    sphere=config[i]
+    print(str(sphere[0])+"+cos(u)*sin(v)", end=", ")
+    print(str(sphere[1])+"+sin(u)*sin(v)", end=", ")
+    print(str(sphere[2])+"+cos(v)", end="  ")
+    print("with pm3d", end="")
+    if i<len(config)-1:
+        print(", \\")
diff --git a/figs/atoms.fig/liquid-base.gp b/figs/atoms.fig/liquid-base.gp
new file mode 100644
index 0000000..4502919
--- /dev/null
+++ b/figs/atoms.fig/liquid-base.gp
@@ -0,0 +1,21 @@
+set terminal pngcairo size 2048,2048
+
+set key off
+unset colorbox
+unset border
+unset xtics
+unset ytics
+unset ztics
+
+set parametric
+
+set view equal xyz
+
+set isosample 100
+
+set pm3d depthorder
+set pm3d lighting primary 0.50 specular 0.6
+
+set palette defined (0 "#339999", 1"#339999")
+
+splot \
diff --git a/figs/atoms.fig/liquid.py b/figs/atoms.fig/liquid.py
new file mode 100644
index 0000000..99b09ba
--- /dev/null
+++ b/figs/atoms.fig/liquid.py
@@ -0,0 +1,39 @@
+#!/usr/bin/env python3
+
+from math import *
+import random
+
+# size of space
+L=15
+# number of particles
+N=100
+
+# check whether two rods overlap
+def check_overlap(sphere1,sphere2):
+    if(sqrt((sphere2[0]-sphere1[0])**2+(sphere2[1]-sphere1[1])**2+(sphere2[2]-sphere1[2])**2)<2):
+        return(True)
+    return(False)
+
+# configuration
+config=[]
+# add spheres
+while len(config)<N:
+    # random position
+    x=[random.uniform(0,L), random.uniform(0,L), random.uniform(0,L)]
+    # check it does not interfere with other spheres
+    fine=True
+    for sphere in config:
+        if(check_overlap(sphere,x)):
+            fine=False
+            break
+    if fine:
+        config.append(x)
+
+for i in range(len(config)):
+    sphere=config[i]
+    print(str(sphere[0])+"+cos(u)*sin(v)", end=", ")
+    print(str(sphere[1])+"+sin(u)*sin(v)", end=", ")
+    print(str(sphere[2])+"+cos(v)", end="  ")
+    print("with pm3d", end="")
+    if i<len(config)-1:
+        print(", \\")