As presented at Harvard University on 2018-10-03HEADv1.0master

4 files changed, 195 insertions, 0 deletions

diff --git a/figs/polymer_example.fig/Makefile b/figs/polymer_example.fig/Makefile
new file mode 120000
index 0000000..704310e
--- /dev/null
+++ b/figs/polymer_example.fig/Makefile
@@ -0,0 +1 @@
+../libs/Makefile
\ No newline at end of file
diff --git a/figs/polymer_example.fig/contours.tikz.tex b/figs/polymer_example.fig/contours.tikz.tex
new file mode 100644
index 0000000..995bda2
--- /dev/null
+++ b/figs/polymer_example.fig/contours.tikz.tex
@@ -0,0 +1,61 @@
+\documentclass{standalone}
+
+\usepackage{tikz}
+\usepackage{dimer}
+
+\begin{document}
+\begin{tikzpicture}
+
+%% mantles
+
+% blue
+\fill[color=red](2,6.5)--++(13,0)--++(0.5,0.5)--++(0,8)--++(-0.5,0.5)--++(-13,0)--++(-0.5,-0.5)--++(0,-8)--cycle;
+\fill[color=white](4,7.5)--++(9,0)--++(0.5,0.5)--++(0,6)--++(-0.5,0.5)--++(-9,0)--++(-0.5,-0.5)--++(0,-6)--cycle;
+% red
+\fill[color=red](6,8.5)--++(4,0)--++(0.5,0.5)--++(0,5)--++(-0.5,0.5)--++(-4,0)--++(-0.5,-0.5)--++(0,-5)--cycle;
+\fill[color=white](7,10.5)--++(2,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-2,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+% teal
+\fill[color=blue](9,19.5)--++(9,0)--++(0.5,-0.5)--++(0,-10)--++(0.5,-0.5)--++(15,0)--++(0.5,0.5)--++(0,22)--++(-0.5,0.5)--++(-25,0)--++(-0.5,-0.5)--++(0,-11)--cycle;
+\fill[color=white](11,20.5)--++(7,0)--++(0.5,-0.5)--++(0.5,-0.5)--++(1,0)--++(0.5,-0.5)--++(0,-9)--++(0.5,-0.5)--++(11,0)--++(0.5,0.5)--++(0,20)--++(-0.5,0.5)--++(-21,0)--++(-0.5,-0.5)--++(0,-9)--cycle;
+% magenta
+\fill[color=blue](13,21.5)--++(18,0)--++(0.5,0.5)--++(0,7)--++(-0.5,0.5)--++(-18,0)--++(-0.5,-0.5)--++(0,-7)--cycle;
+\fill[color=white](14,23.5)--++(16,0)--++(0.5,0.5)--++(0,3)--++(-0.5,0.5)--++(-16,0)--++(-0.5,-0.5)--++(0,-3)--cycle;
+% orange
+\fill[color=blue](15,23.5)--++(5,0)--++(0.5,0.5)--++(0,3)--++(-0.5,0.5)--++(-5,0)--++(-0.5,-0.5)--++(0,-3)--cycle;
+\fill[color=white](17,24.5)--++(1,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-1,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+% green
+\fill[color=blue](23,24.5)--++(3,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-3,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+
+
+%% segments
+
+\foreach \i in {9,...,14}{
+  \draw[color=red, line width=15pt](3.5,\i)--++(2,0);
+  \draw[color=red, line width=15pt](10.5,\i)--++(3,0);
+}
+
+\foreach \i in {22,...,29}{
+  \draw[color=blue, line width=15pt](10.5,\i)--++(2,0);
+  \draw[color=blue, line width=15pt](31.5,\i)--++(1,0);
+}
+
+\foreach \i in {23,...,26}{
+  \draw[color=blue, line width=15pt](\i,23.5)--++(0,1);
+  \draw[color=blue, line width=15pt](\i,26.5)--++(0,1);
+}
+
+%% grid
+\grid{36}{36}{[color=lightgray](0,0)}
+
+
+%% loops
+\draw[color=black, line width=5pt](2,6.5)--++(13,0)--++(0.5,0.5)--++(0,8)--++(-0.5,0.5)--++(-13,0)--++(-0.5,-0.5)--++(0,-8)--cycle;
+\draw[color=black, line width=5pt](6,8.5)--++(4,0)--++(0.5,0.5)--++(0,5)--++(-0.5,0.5)--++(-4,0)--++(-0.5,-0.5)--++(0,-5)--cycle;
+\draw[color=black, line width=5pt](9,19.5)--++(9,0)--++(0.5,-0.5)--++(0,-10)--++(0.5,-0.5)--++(15,0)--++(0.5,0.5)--++(0,22)--++(-0.5,0.5)--++(-25,0)--++(-0.5,-0.5)--++(0,-11)--cycle;
+\draw[color=black, line width=5pt](13,21.5)--++(18,0)--++(0.5,0.5)--++(0,7)--++(-0.5,0.5)--++(-18,0)--++(-0.5,-0.5)--++(0,-7)--cycle;
+\draw[color=black, line width=5pt](15,23.5)--++(5,0)--++(0.5,0.5)--++(0,3)--++(-0.5,0.5)--++(-5,0)--++(-0.5,-0.5)--++(0,-3)--cycle;
+\draw[color=black, line width=5pt](23,24.5)--++(3,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-3,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+
+\end{tikzpicture}
+\end{document}
+
diff --git a/figs/polymer_example.fig/libs/dimer.sty b/figs/polymer_example.fig/libs/dimer.sty
new file mode 120000
index 0000000..2d83c8a
--- /dev/null
+++ b/figs/polymer_example.fig/libs/dimer.sty
@@ -0,0 +1 @@
+../../libs/dimer.sty
\ No newline at end of file
diff --git a/figs/polymer_example.fig/segments.tikz.tex b/figs/polymer_example.fig/segments.tikz.tex
new file mode 100644
index 0000000..9669e3b
--- /dev/null
+++ b/figs/polymer_example.fig/segments.tikz.tex
@@ -0,0 +1,132 @@
+\documentclass{standalone}
+
+\usepackage{tikz}
+\usepackage{dimer}
+
+\begin{document}
+\begin{tikzpicture}
+
+
+%% mantles
+
+% blue
+\fill[color=blue](2,6.5)--++(13,0)--++(0.5,0.5)--++(0,8)--++(-0.5,0.5)--++(-13,0)--++(-0.5,-0.5)--++(0,-8)--cycle;
+\fill[color=white](4,7.5)--++(9,0)--++(0.5,0.5)--++(0,6)--++(-0.5,0.5)--++(-9,0)--++(-0.5,-0.5)--++(0,-6)--cycle;
+% red
+\fill[color=red](6,8.5)--++(4,0)--++(0.5,0.5)--++(0,5)--++(-0.5,0.5)--++(-4,0)--++(-0.5,-0.5)--++(0,-5)--cycle;
+\fill[color=white](7,10.5)--++(2,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-2,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+% teal
+\fill[color=teal](9,19.5)--++(9,0)--++(0.5,-0.5)--++(0,-10)--++(0.5,-0.5)--++(15,0)--++(0.5,0.5)--++(0,22)--++(-0.5,0.5)--++(-25,0)--++(-0.5,-0.5)--++(0,-11)--cycle;
+\fill[color=white](11,20.5)--++(7,0)--++(0.5,-0.5)--++(0.5,-0.5)--++(1,0)--++(0.5,-0.5)--++(0,-9)--++(0.5,-0.5)--++(11,0)--++(0.5,0.5)--++(0,20)--++(-0.5,0.5)--++(-21,0)--++(-0.5,-0.5)--++(0,-9)--cycle;
+% magenta
+\fill[color=magenta](13,21.5)--++(18,0)--++(0.5,0.5)--++(0,7)--++(-0.5,0.5)--++(-18,0)--++(-0.5,-0.5)--++(0,-7)--cycle;
+\fill[color=white](14,23.5)--++(16,0)--++(0.5,0.5)--++(0,3)--++(-0.5,0.5)--++(-16,0)--++(-0.5,-0.5)--++(0,-3)--cycle;
+% cyan
+\fill[color=cyan](23,11.5)--++(7,0)--++(0.5,0.5)--++(0,5)--++(-0.5,0.5)--++(-7,0)--++(-0.5,-0.5)--++(0,-5)--cycle;
+\fill[color=white](24,13.5)--++(5,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-5,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+% orange
+\fill[color=orange](15,23.5)--++(5,0)--++(0.5,0.5)--++(0,3)--++(-0.5,0.5)--++(-5,0)--++(-0.5,-0.5)--++(0,-3)--cycle;
+\fill[color=white](17,24.5)--++(1,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-1,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+% green
+\fill[color=green](23,24.5)--++(3,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-3,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+
+
+%% segments
+
+\foreach \i in {0,...,1}{
+  \draw[color=gray, line width=15pt](\i,-0.5)--++(0,37);
+}
+\foreach \i in {2,...,8}{
+  \draw[color=gray, line width=15pt](\i,-0.5)--++(0,7);
+  \draw[color=gray, line width=15pt](\i,15.5)--++(0,21);
+}
+\foreach \i in {9,...,15}{
+  \draw[color=gray, line width=15pt](\i,-0.5)--++(0,7);
+  \draw[color=gray, line width=15pt](\i,15.5)--++(0,4);
+  \draw[color=gray, line width=15pt](\i,31.5)--++(0,5);
+}
+\foreach \i in {16,...,18}{
+  \draw[color=gray, line width=15pt](\i,-0.5)--++(0,20);
+  \draw[color=gray, line width=15pt](\i,31.5)--++(0,5);
+}
+\foreach \i in {19,...,34}{
+  \draw[color=gray, line width=15pt](\i,-0.5)--++(0,9);
+  \draw[color=gray, line width=15pt](\i,31.5)--++(0,5);
+}
+\foreach \i in {35,...,36}{
+  \draw[color=gray, line width=15pt](\i,-0.5)--++(0,37);
+}
+
+\draw[color=blue, line width=15pt](3.5,8)--++(10,0);
+\foreach \i in {9,...,14}{
+  \draw[color=blue, line width=15pt](3.5,\i)--++(2,0);
+  \draw[color=blue, line width=15pt](10.5,\i)--++(3,0);
+}
+
+\foreach \i in {7,...,9}{
+  \draw[color=red, line width=15pt](\i,10.5)--++(0,2);
+}
+
+\foreach \i in {10,...,11}{
+  \draw[color=teal, line width=15pt](20.5,\i)--++(12,0);
+}
+\foreach \i in {12,...,17}{
+  \draw[color=teal, line width=15pt](20.5,\i)--++(2,0);
+  \draw[color=teal, line width=15pt](30.5,\i)--++(2,0);
+}
+\foreach \i in {18,...,19}{
+  \draw[color=teal, line width=15pt](20.5,\i)--++(12,0);
+}
+\draw[color=teal, line width=15pt](18.5,20)--++(14,0);
+\draw[color=teal, line width=15pt](10.5,21)--++(22,0);
+\foreach \i in {22,...,29}{
+  \draw[color=teal, line width=15pt](10.5,\i)--++(2,0);
+  \draw[color=teal, line width=15pt](31.5,\i)--++(1,0);
+}
+\draw[color=teal, line width=15pt](10.5,30)--++(22,0);
+
+\foreach \i in {24,...,29}{
+  \draw[color=cyan, line width=15pt](\i,13.5)--++(0,2);
+}
+
+\draw[color=magenta, line width=15pt](14,23.5)--++(0,4);
+\foreach \i in {21,...,22}{
+  \draw[color=magenta, line width=15pt](\i,23.5)--++(0,4);
+}
+\foreach \i in {23,...,26}{
+  \draw[color=magenta, line width=15pt](\i,23.5)--++(0,1);
+  \draw[color=magenta, line width=15pt](\i,26.5)--++(0,1);
+}
+\foreach \i in {27,...,30}{
+  \draw[color=magenta, line width=15pt](\i,23.5)--++(0,4);
+}
+
+\foreach \i in {25,...,26}{
+  \draw[color=orange, line width=15pt](16.5,\i)--++(2,0);
+}
+
+
+
+%% grid
+\grid{36}{36}{[color=lightgray](0,0)}
+
+%% loops
+% blue
+\draw[color=black, line width=5pt](2,6.5)--++(13,0)--++(0.5,0.5)--++(0,8)--++(-0.5,0.5)--++(-13,0)--++(-0.5,-0.5)--++(0,-8)--cycle;
+% red
+\draw[color=black, line width=5pt](6,8.5)--++(4,0)--++(0.5,0.5)--++(0,5)--++(-0.5,0.5)--++(-4,0)--++(-0.5,-0.5)--++(0,-5)--cycle;
+% teal
+\draw[color=black, line width=5pt](9,19.5)--++(9,0)--++(0.5,-0.5)--++(0,-10)--++(0.5,-0.5)--++(15,0)--++(0.5,0.5)--++(0,22)--++(-0.5,0.5)--++(-25,0)--++(-0.5,-0.5)--++(0,-11)--cycle;
+% magenta
+\draw[color=black, line width=5pt](13,21.5)--++(18,0)--++(0.5,0.5)--++(0,7)--++(-0.5,0.5)--++(-18,0)--++(-0.5,-0.5)--++(0,-7)--cycle;
+% cyan
+\draw[color=black, line width=5pt](23,11.5)--++(7,0)--++(0.5,0.5)--++(0,5)--++(-0.5,0.5)--++(-7,0)--++(-0.5,-0.5)--++(0,-5)--cycle;
+% orange
+\draw[color=black, line width=5pt](15,23.5)--++(5,0)--++(0.5,0.5)--++(0,3)--++(-0.5,0.5)--++(-5,0)--++(-0.5,-0.5)--++(0,-3)--cycle;
+%green
+\draw[color=black, line width=5pt](23,24.5)--++(3,0)--++(0.5,0.5)--++(0,1)--++(-0.5,0.5)--++(-3,0)--++(-0.5,-0.5)--++(0,-1)--cycle;
+
+
+\end{tikzpicture}
+\end{document}
+